BioSeqDataLib Documentation

The BioSeqDataLib (BSDL) has been developed to provide an easy access to biological data. Its main focus is on domain data however it contains several classes to deal with other (mainly sequence) data.

Modules

The BSDL currently consists of three main modules taking care of three areas of Bioinformatics.

Sequence module

The sequence module contains mainly classes and functions that are related to reading, writing and analysing sequence data. A range of different Input formats are currently supported.

Domain module

The domain module contains classes and functions to reading and writing of domain data. A range of different Input formats are currently supported.

Phylogeny module

The phylogeny module provides a class to read a phylogenetic tree and allows to traverse it in different ways.