dsmReader

Small program that can extract similarity values from a Domain Similarity Matrix (DSM). DSMs can be obtained from the following Website: https://domainworld.uni-muenster.de/data/dsm/

General options

The general options influence the general behaviour of dsmReader:

-h, --help

Prints a simple help message with a small description of all the available options.

-m <FILE>, --matrix <FILE>

The DSM file.

--d1 <DOMAIN>

The ID of the first domain

--d2 <DOMAIN>

The ID of the second domain

-n, --use-negative

Scale values to include negative values.

Simple Usage

$ dsmReader -m pfam-31.dsm  --d1 PF00001 --d2 PF00002